PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025266-PA
Common NameOsI_25136
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 293aa    MW: 31029.1 Da    PI: 6.8039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025266-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08143187554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+ri +++  L++l+P+       K + a++L +  +Y+k L
  BGIOSGA025266-PA 143 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 187
                       99***********************7.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-15136197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-10136192No hitNo description
PROSITE profilePS5088815.796138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14140198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-6143187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAGQQPPTGG AEDDFFDHFF SIPSAAAAGA GGVGGLGSGD HHPFPLALSL DAEGAGAARR  60
LLDGGHDGGR TDRDPVQLAG LFAPVFGAAA GVQPPHLRAP PPPQVFHAQP KPGEGAMAAP  120
QPQQPPAPRP KVRARRGQAT DPHSIAERLR RERIAERMRA LQDLVPNTNK TDRAAMLDEI  180
LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DIPISVKGEA SDSGSKQQIW EKWSTDGTEK  240
QVAKLMEEDI GAAMQFLQSK ALCMMPISLA MAIYDTQHSQ DGHSVKPEPN TPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.83440.0leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329766410.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644607.10.0PREDICTED: transcription factor UNE12
SwissprotO227684e-80UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0E0DS080.0A0A0E0DS08_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HXG20.0A0A0E0HXG2_ORYNI; Uncharacterized protein
TrEMBLA2YIT40.0A2YIT4_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA025266-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-55bHLH family protein